LOC_Os01g18670.1

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000418 (LandPlants) Phylogenetic Tree(s): OG_05_0000418_tree ,
OG_06_0000295 (SeedPlants) Phylogenetic Tree(s): OG_06_0000295_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g18670.1
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00076p00195870	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00145p00075460	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.03	Archaeplastida
AT3G28390	PGP18	P-glycoprotein 18	0.01	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.04	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.04	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.03	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.02	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_02469	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_08706	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_10211	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_36497	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_38960	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os03g17180.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os05g47500.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_10436810g0020	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_107576g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_111099g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_560534g0010	No alias	No annotation	0.03	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Mp1g26440.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Mp2g02910.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Mp3g11830.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida
Mp7g04390.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.01	Archaeplastida
Pp3c1_34680V3.1	No alias	P-glycoprotein 10	0.02	Archaeplastida
Pp3c1_7210V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Pp3c3_5680V3.1	No alias	P-glycoprotein 10	0.02	Archaeplastida
Pp3c6_7260V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Smo123915	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo148837	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo230134	No alias	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo410515	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc04g010310.4.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc05g013890.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc12g098840.3.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e014797_P002	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e017444_P002	No alias	subfamily ABCB transporter	0.07	Archaeplastida
Zm00001e019933_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e020073_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e025438_P001	No alias	subfamily ABCB transporter	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Neighborhood
MF	GO:0004620	phospholipase activity	IEP	Neighborhood
MF	GO:0004629	phospholipase C activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0004834	tryptophan synthase activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015689	molybdate ion transport	IEP	Neighborhood
BP	GO:0015858	nucleoside transport	IEP	Neighborhood
BP	GO:0015931	nucleobase-containing compound transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0042430	indole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901642	nucleoside transmembrane transport	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	1061	1209
IPR003439	ABC_transporter-like	414	561
IPR011527	ABC1_TM_dom	719	989
IPR011527	ABC1_TM_dom	72	345

External Links

No external refs found!

LOC_Os01g18670.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation