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  5. LOC_Os01g21420.1

LOC_Os01g21420.1


Description : SR30/34 RNA splicing factor


Gene families : OG0001375 (Archaeplastida) Phylogenetic Tree(s): OG0001375_tree ,
OG_05_0001509 (LandPlants) Phylogenetic Tree(s): OG_05_0001509_tree ,
OG_06_0001416 (SeedPlants) Phylogenetic Tree(s): OG_06_0001416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g21420.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000857.20 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Cre06.g278239 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Gb_24206 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida
MA_259575g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c17_17620V3.1 No alias SER/ARG-rich protein 34A 0.02 Archaeplastida
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.02 Archaeplastida
Solyc09g075090.1.1 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 175 237
No external refs found!