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  5. LOC_Os01g24010.1

LOC_Os01g24010.1


Description : subfamily ABCG transporter


Gene families : OG0000050 (Archaeplastida) Phylogenetic Tree(s): OG0000050_tree ,
OG_05_0000049 (LandPlants) Phylogenetic Tree(s): OG_05_0000049_tree ,
OG_06_0000052 (SeedPlants) Phylogenetic Tree(s): OG_06_0000052_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g24010.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AT4G15233 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.02 Archaeplastida
AT4G15236 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.02 Archaeplastida
GSVIVT01017187001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
GSVIVT01017196001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
GSVIVT01017201001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
GSVIVT01017204001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
GSVIVT01031378001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Gb_30095 No alias subfamily ABCG transporter 0.01 Archaeplastida
LOC_Os02g21340.1 No alias subfamily ABCG transporter 0.01 Archaeplastida
LOC_Os07g33780.1 No alias subfamily ABCG transporter 0.01 Archaeplastida
LOC_Os08g29570.1 No alias subfamily ABCG transporter 0.02 Archaeplastida
Mp8g13070.1 No alias subfamily ABCG transporter 0.02 Archaeplastida
Solyc09g091660.3.1 No alias subfamily ABCG transporter 0.01 Archaeplastida
Solyc12g019620.2.1 No alias subfamily ABCG transporter 0.02 Archaeplastida
Solyc12g019640.2.1 No alias subfamily ABCG transporter 0.02 Archaeplastida
Zm00001e006460_P001 No alias subfamily ABCG transporter 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 178 360
IPR013525 ABC_2_trans 515 725
IPR013525 ABC_2_trans 1178 1392
IPR029481 ABC_trans_N 102 152
IPR003439 ABC_transporter-like 881 1033
IPR013581 PDR_assoc 730 790
No external refs found!