1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g27040.1

LOC_Os01g27040.1


Description : chromatin remodeling factor (Iswi)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0003200 (LandPlants) Phylogenetic Tree(s): OG_05_0003200_tree ,
OG_06_0004460 (SeedPlants) Phylogenetic Tree(s): OG_06_0004460_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g27040.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Cpa|evm.model.tig00000545.10 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR015195 SLIDE 935 1045
IPR000330 SNF2_N 244 511
IPR015194 ISWI_HAND-dom 795 856
IPR001650 Helicase_C 534 646
No external refs found!