1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00002p00116290

AMTR_s00002p00116290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.71

Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT6 zeta subunit


Gene families : OG0003634 (Archaeplastida) Phylogenetic Tree(s): OG0003634_tree ,
OG_05_0003812 (LandPlants) Phylogenetic Tree(s): OG_05_0003812_tree ,
OG_06_0003690 (SeedPlants) Phylogenetic Tree(s): OG_06_0003690_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00116290
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT3G02530 No alias TCP-1/cpn60 chaperonin family protein 0.05 Archaeplastida
AT5G16070 No alias TCP-1/cpn60 chaperonin family protein 0.04 Archaeplastida
Cre09.g397200 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 Archaeplastida
GSVIVT01031067001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.04 Archaeplastida
Gb_18443 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.03 Archaeplastida
LOC_Os05g05470.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.02 Archaeplastida
MA_8438g0020 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.04 Archaeplastida
MA_94211g0010 No alias T-complex protein 1 subunit zeta 1 OS=Arabidopsis... 0.03 Archaeplastida
Mp8g07530.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.04 Archaeplastida
Pp3c11_26000V3.1 No alias TCP-1/cpn60 chaperonin family protein 0.03 Archaeplastida
Solyc02g063090.3.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.03 Archaeplastida
Solyc02g085790.3.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.06 Archaeplastida
Zm00001e010996_P001 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0044267 cellular protein metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 29 245
No external refs found!