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  5. AMTR_s00002p00133480

AMTR_s00002p00133480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.94

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor


Gene families : OG0004888 (Archaeplastida) Phylogenetic Tree(s): OG0004888_tree ,
OG_05_0003570 (LandPlants) Phylogenetic Tree(s): OG_05_0003570_tree ,
OG_06_0003926 (SeedPlants) Phylogenetic Tree(s): OG_06_0003926_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00133480
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00213160 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G30010 No alias Intron maturase, type II family protein 0.05 Archaeplastida
Gb_04055 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.08 Archaeplastida
Gb_27973 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.05 Archaeplastida
LOC_Os10g41790.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
Solyc08g077385.1.1 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.03 Archaeplastida
Zm00001e000458_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.06 Archaeplastida
Zm00001e000640_P001 No alias nMAT1/2 type-I mitochondrial RNA splicing factor 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003964 RNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006278 RNA-dependent DNA biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000922 spindle pole IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 8 158
No external refs found!