LOC_Os01g35254.1

Description : Putative disease resistance protein RGA3 OS=Solanum bulbocastanum (sp|q7xa40|rga3_solbu : 261.0)

Gene families : OG0000018 (Archaeplastida) Phylogenetic Tree(s): OG0000018_tree ,
OG_05_0000007 (LandPlants) Phylogenetic Tree(s): OG_05_0000007_tree ,
OG_06_0000001 (SeedPlants) Phylogenetic Tree(s): OG_06_0000001_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g35254.1
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g03590.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os01g04140.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os01g18550.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os01g24530.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os01g33630.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os01g36766.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os01g38810.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os02g25370.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os02g25520.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os02g49290.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os04g07170.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os04g11410.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os04g23280.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os04g26420.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os05g09320.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os05g16580.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os05g26100.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os05g27860.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os05g39460.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os05g48110.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os05g50880.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os06g15850.1	No alias	Ethylene receptor 4 OS=Oryza sativa subsp. japonica...	0.04	Archaeplastida
LOC_Os06g16900.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os06g21150.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os06g42290.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os07g46120.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os08g04870.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os08g08950.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os08g11300.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os08g26280.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os09g01900.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os09g04200.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os09g20130.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os10g07554.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os10g12539.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os10g29010.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os11g14350.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os11g23810.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os11g26250.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os11g35762.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os11g41050.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g03770.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g11600.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g13080.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g14200.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g14820.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g23840.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g24680.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os12g36480.1	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006417	regulation of translation	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0017148	negative regulation of translation	IEP	Neighborhood
MF	GO:0030597	RNA glycosylase activity	IEP	Neighborhood
MF	GO:0030598	rRNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Neighborhood
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0032269	negative regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	750	969
IPR003653	Peptidase_C48_C	594	706

External Links

No external refs found!

LOC_Os01g35254.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation