LOC_Os01g36830.1

Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 252.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 169.1)

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0001748 (SeedPlants) Phylogenetic Tree(s): OG_06_0001748_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g36830.1
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT2G43860	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT3G59850	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT4G01890	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	65	331

External Links

No external refs found!

LOC_Os01g36830.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation