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  5. LOC_Os01g36890.2

LOC_Os01g36890.2


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002910 (Archaeplastida) Phylogenetic Tree(s): OG0002910_tree ,
OG_05_0002914 (LandPlants) Phylogenetic Tree(s): OG_05_0002914_tree ,
OG_06_0002579 (SeedPlants) Phylogenetic Tree(s): OG_06_0002579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g36890.2
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.04 Archaeplastida
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 Archaeplastida
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida
Solyc08g061000.4.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070531 BRCA1-A complex IEP Neighborhood
CC GO:0070552 BRISC complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 193 300
IPR011545 DEAD/DEAH_box_helicase_dom 2 153
No external refs found!