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  5. LOC_Os01g39110.1

LOC_Os01g39110.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000200 (Archaeplastida) Phylogenetic Tree(s): OG0000200_tree ,
OG_05_0000106 (LandPlants) Phylogenetic Tree(s): OG_05_0000106_tree ,
OG_06_0000058 (SeedPlants) Phylogenetic Tree(s): OG_06_0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g39110.1
Cluster HCCA: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00120910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00059p00106830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AT1G14580 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT1G68130 IDD14, AtIDD14 indeterminate(ID)-domain 14 0.04 Archaeplastida
AT2G02070 IDD5, AtIDD5 indeterminate(ID)-domain 5 0.04 Archaeplastida
AT3G13810 IDD11, AtIDD11 indeterminate(ID)-domain 11 0.03 Archaeplastida
AT3G50700 IDD2, AtIDD2 indeterminate(ID)-domain 2 0.06 Archaeplastida
AT4G02670 AtIDD12, IDD12 indeterminate(ID)-domain 12 0.04 Archaeplastida
AT5G66730 No alias C2H2-like zinc finger protein 0.05 Archaeplastida
GSVIVT01003119001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
GSVIVT01010284001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01010961001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01020612001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
GSVIVT01025166001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
Gb_17209 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os02g45054.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os03g10140.1 No alias C2H2 zinc finger transcription factor. elicitor peptide... 0.04 Archaeplastida
LOC_Os08g36390.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10426334g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_10430137g0020 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
MA_10431498g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp1g15660.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Mp5g20530.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc02g085580.4.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Solyc04g008500.4.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc09g007550.3.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e000780_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e004751_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 94 116
No external refs found!