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  5. LOC_Os01g40640.1

LOC_Os01g40640.1


Description : plastidial mRNA chaperone (RLSB/BSF)


Gene families : OG0005403 (Archaeplastida) Phylogenetic Tree(s): OG0005403_tree ,
OG_05_0004155 (LandPlants) Phylogenetic Tree(s): OG_05_0004155_tree ,
OG_06_0004968 (SeedPlants) Phylogenetic Tree(s): OG_06_0004968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g40640.1
Cluster HCCA: Cluster_327

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.02 Archaeplastida
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.04 Archaeplastida
Pp3c14_19380V3.1 No alias Nucleic acid-binding proteins superfamily 0.04 Archaeplastida
Solyc04g072036.1.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 Archaeplastida
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR003029 S1_domain 284 355
No external refs found!