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Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.139
Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase regulatory protein
Gene families : OG0001318 (Archaeplastida) Phylogenetic Tree(s): OG0001318_tree ,
OG_05_0001428 (LandPlants) Phylogenetic Tree(s): OG_05_0001428_tree ,
OG_06_0001398 (SeedPlants) Phylogenetic Tree(s): OG_06_0001398_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00002p00165660 | |
| Cluster | HCCA: Cluster_194 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G10350 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00001628.7 | No alias | RNA processing.RNA 3-end polyadenylation.poly(A) RNA... | 0.04 | Archaeplastida | |
| Cre06.g274500 | No alias | RNA processing.RNA 3-end polyadenylation.poly(A) RNA... | 0.02 | Archaeplastida | |
| MA_158483g0010 | No alias | poly(A) RNA polymerase regulatory protein | 0.02 | Archaeplastida | |
| Solyc11g009090.2.1 | No alias | poly(A) RNA polymerase regulatory protein | 0.03 | Archaeplastida | |
| Zm00001e015900_P004 | No alias | poly(A) RNA polymerase regulatory protein | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0007155 | cell adhesion | IEP | Neighborhood |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Neighborhood |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| BP | GO:0017144 | drug metabolic process | IEP | Neighborhood |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0022610 | biological adhesion | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0030955 | potassium ion binding | IEP | Neighborhood |
| MF | GO:0031369 | translation initiation factor binding | IEP | Neighborhood |
| MF | GO:0031420 | alkali metal ion binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046034 | ATP metabolic process | IEP | Neighborhood |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Neighborhood |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 95 | 163 |
| No external refs found! |