LOC_Os01g41880.1


Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum (sp|q9sq56|rgga_tobac : 98.6)


Gene families : OG0002128 (Archaeplastida) Phylogenetic Tree(s): OG0002128_tree ,
OG_05_0001404 (LandPlants) Phylogenetic Tree(s): OG_05_0001404_tree ,
OG_06_0002073 (SeedPlants) Phylogenetic Tree(s): OG_06_0002073_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g41880.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT4G17520 No alias Hyaluronan / mRNA binding family 0.07 Archaeplastida
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_141447g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g04410.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c7_26560V3.1 No alias Hyaluronan / mRNA binding family 0.03 Archaeplastida
Solyc01g090190.3.1 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e019955_P001 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 Archaeplastida
Zm00001e019958_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.11 Archaeplastida
Zm00001e026661_P002 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 156 268
IPR019084 Stm1-like_N 1 68
No external refs found!