AMTR_s00002p00186590 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.163

Description : RNA biosynthesis.transcriptional activation.ARR-B transcription factor

Gene families : OG0000192 (Archaeplastida) Phylogenetic Tree(s): OG0000192_tree ,
OG_05_0041283 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0035728 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00186590
Cluster	HCCA: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00251530	evm_27.TU.AmTr_v1...	Multi-process regulation.circadian clock.evening element...	0.09	Archaeplastida
AMTR_s00049p00081480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.ARR-B...	0.02	Archaeplastida
AT1G49190	ARR19, RR19	response regulator 19	0.02	Archaeplastida
AT1G67710	ARR11	response regulator 11	0.03	Archaeplastida
AT2G01760	RR14, ARR14	response regulator 14	0.03	Archaeplastida
AT3G62670	RR20, MEE41, ARR20	response regulator 20	0.01	Archaeplastida
Cre02.g083750	No alias	Transcription factor BOA OS=Arabidopsis thaliana	0.08	Archaeplastida
GSVIVT01010627001	No alias	RNA biosynthesis.transcriptional activation.ARR-B...	0.03	Archaeplastida
GSVIVT01025785001	No alias	No description available	0.04	Archaeplastida
GSVIVT01029177001	No alias	RNA biosynthesis.transcriptional activation.ARR-B...	0.01	Archaeplastida
MA_114951g0010	No alias	B-type cytokinin ARR response activator. transcription...	0.01	Archaeplastida
MA_17547g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_601142g0010	No alias	B-type cytokinin ARR response activator. transcription...	0.01	Archaeplastida
MA_7459g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_92689g0020	No alias	B-type cytokinin ARR response activator. transcription...	0.03	Archaeplastida
Solyc01g065540.3.1	No alias	B-type cytokinin ARR response activator. transcription...	0.03	Archaeplastida
Solyc07g005140.4.1	No alias	B-type cytokinin ARR response activator. transcription...	0.03	Archaeplastida
Zm00001e013844_P002	No alias	B-type cytokinin ARR response activator. transcription...	0.02	Archaeplastida
Zm00001e028539_P002	No alias	B-type cytokinin ARR response activator. transcription...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEA	Interproscan
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	231	281
IPR001789	Sig_transdc_resp-reg_receiver	21	129

External Links

No external refs found!

AMTR_s00002p00186590 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation