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  5. AMTR_s00002p00195390

AMTR_s00002p00195390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.177

Description : Cell wall.cell wall proteins.expansins.beta-like-type expansin


Gene families : OG0004259 (Archaeplastida) Phylogenetic Tree(s): OG0004259_tree ,
OG_05_0002947 (LandPlants) Phylogenetic Tree(s): OG_05_0002947_tree ,
OG_06_0001704 (SeedPlants) Phylogenetic Tree(s): OG_06_0001704_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00195390
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT4G17030 ATHEXP BETA 3.1,... expansin-like B1 0.04 Archaeplastida
GSVIVT01004469001 No alias Expansin-like B1 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01004595001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.04 Archaeplastida
GSVIVT01005915001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.04 Archaeplastida
GSVIVT01005917001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.03 Archaeplastida
GSVIVT01013208001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 Archaeplastida
Gb_10701 No alias beta-like-class expansin 0.04 Archaeplastida
Gb_10702 No alias beta-like-class expansin 0.03 Archaeplastida
Gb_10703 No alias beta-like-class expansin 0.03 Archaeplastida
MA_126777g0010 No alias Expansin-like B1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Solyc06g060970.2.1 No alias beta-like-class expansin 0.03 Archaeplastida
Solyc08g007090.3.1 No alias Expansin-like B1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Solyc08g077330.3.1 No alias beta-like-class expansin 0.04 Archaeplastida
Solyc08g077900.3.1 No alias beta-like-class expansin 0.05 Archaeplastida
Solyc08g077910.3.1 No alias beta-like-class expansin 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0042816 vitamin B6 metabolic process IEP Neighborhood
BP GO:0042819 vitamin B6 biosynthetic process IEP Neighborhood
BP GO:0042822 pyridoxal phosphate metabolic process IEP Neighborhood
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Neighborhood
BP GO:0046184 aldehyde biosynthetic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 61 136
IPR007117 Expansin_CBD 149 234
No external refs found!