LOC_Os01g47330.1


Description : component psRPL12 of large ribosomal subunit proteome


Gene families : OG0005000 (Archaeplastida) Phylogenetic Tree(s): OG0005000_tree ,
OG_05_0004365 (LandPlants) Phylogenetic Tree(s): OG_05_0004365_tree ,
OG_06_0005437 (SeedPlants) Phylogenetic Tree(s): OG_06_0005437_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g47330.1
Cluster HCCA: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00109340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 Archaeplastida
AT3G27830 RPL12-A, RPL12 ribosomal protein L12-A 0.12 Archaeplastida
AT3G27850 RPL12-C ribosomal protein L12-C 0.15 Archaeplastida
Cre13.g581650 No alias Protein biosynthesis.organelle translation... 0.07 Archaeplastida
GSVIVT01032454001 No alias Protein biosynthesis.organelle translation... 0.09 Archaeplastida
Gb_05150 No alias component psRPL12 of large ribosomal subunit proteome 0.07 Archaeplastida
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.18 Archaeplastida
Pp3c16_2080V3.1 No alias ribosomal protein L12-C 0.12 Archaeplastida
Pp3c25_1440V3.1 No alias ribosomal protein L12-C 0.12 Archaeplastida
Pp3c26_10990V3.1 No alias ribosomal protein L12-A 0.05 Archaeplastida
Pp3c4_24130V3.1 No alias ribosomal protein L12-C 0.12 Archaeplastida
Pp3c5_2700V3.1 No alias ribosomal protein L12-C 0.07 Archaeplastida
Solyc02g086730.3.1 No alias component psRPL12 of large ribosomal subunit proteome 0.03 Archaeplastida
Solyc02g086740.1.1 No alias component psRPL12 of large ribosomal subunit proteome 0.06 Archaeplastida
Zm00001e020247_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.09 Archaeplastida
Zm00001e028001_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.19 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008198 ferrous iron binding IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 118 184
IPR008932 Ribosomal_L7/L12_oligo 58 104
No external refs found!