LOC_Os01g48060.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002431 (SeedPlants) Phylogenetic Tree(s): OG_06_0002431_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g48060.1
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.05	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.04	Archaeplastida
AT4G23980	ARF9	auxin response factor 9	0.03	Archaeplastida
GSVIVT01011008001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01023149001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_10929	No alias	Auxin response factor 16 OS=Oryza sativa subsp. indica...	0.04	Archaeplastida
Gb_12414	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_85955g0020	No alias	transcription factor (ARF)	0.03	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Solyc01g096070.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc04g081240.2.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.1	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.08	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e032135_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.07	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
MF	GO:0050661	NADP binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	147	248
IPR010525	Auxin_resp	273	357

External Links

No external refs found!

LOC_Os01g48060.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation