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  5. LOC_Os01g48370.1

LOC_Os01g48370.1


Description : transcription factor (TUB)


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0005934 (SeedPlants) Phylogenetic Tree(s): OG_06_0005934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g48370.1
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.03 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.04 Archaeplastida
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e039448_P004 No alias transcription factor (TUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000007 Tubby_C 98 351
No external refs found!