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  5. LOC_Os01g49830.1

LOC_Os01g49830.1


Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000701 (SeedPlants) Phylogenetic Tree(s): OG_06_0000701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g49830.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AMTR_s00018p00040300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AMTR_s00047p00199500 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.04 Archaeplastida
AT3G25730 EDF3 ethylene response DNA binding factor 3 0.03 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01023582001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01036447001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
Gb_18035 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
LOC_Os06g01860.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
LOC_Os10g39190.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
MA_10436315g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida
MA_18923g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_23673g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_6617152g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_70029g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_94318g0010 No alias transcription factor (AP2-RAV) 0.02 Archaeplastida
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.04 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.04 Archaeplastida
Solyc05g004000.1.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Solyc05g009790.1.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida
Solyc08g013690.1.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Solyc10g083210.2.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.01 Archaeplastida
Zm00001e016956_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Zm00001e020092_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Zm00001e026443_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
Zm00001e028111_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.08 Archaeplastida
Zm00001e032325_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 80 128
IPR003340 B3_DNA-bd 216 308
No external refs found!