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  5. LOC_Os01g50470.1

LOC_Os01g50470.1


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 922.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g50470.1
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AT3G23270 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
AT4G14368 No alias Regulator of chromosome condensation (RCC1) family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 968 1021
IPR000306 Znf_FYVE 600 665
IPR000408 Reg_chr_condens 549 596
IPR000408 Reg_chr_condens 495 544
IPR000408 Reg_chr_condens 381 430
IPR000408 Reg_chr_condens 275 323
IPR000408 Reg_chr_condens 446 492
IPR000408 Reg_chr_condens 326 376
No external refs found!