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  5. LOC_Os01g51810.1

LOC_Os01g51810.1


Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana (sp|q9ln01|ppr21_arath : 383.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0017855 (LandPlants) Phylogenetic Tree(s): OG_05_0017855_tree ,
OG_06_0017403 (SeedPlants) Phylogenetic Tree(s): OG_06_0017403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g51810.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.02 Archaeplastida
AMTR_s00078p00067180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_00199 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005534 galactose binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
MF GO:0048029 monosaccharide binding IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 356 380
IPR002885 Pentatricopeptide_repeat 155 180
IPR002885 Pentatricopeptide_repeat 124 147
IPR002885 Pentatricopeptide_repeat 460 481
IPR002885 Pentatricopeptide_repeat 281 328
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 383 428
No external refs found!