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  5. LOC_Os01g52480.1

LOC_Os01g52480.1


Description : Senescence/dehydration-associated protein At4g35985, chloroplastic OS=Arabidopsis thaliana (sp|f4jnx2|sdeh4_arath : 189.0)


Gene families : OG0000668 (Archaeplastida) Phylogenetic Tree(s): OG0000668_tree ,
OG_05_0000954 (LandPlants) Phylogenetic Tree(s): OG_05_0000954_tree ,
OG_06_0002317 (SeedPlants) Phylogenetic Tree(s): OG_06_0002317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52480.1
Cluster HCCA: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00140490 evm_27.TU.AmTr_v1... Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
AMTR_s00056p00140820 evm_27.TU.AmTr_v1... Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
AT3G21600 No alias Senescence/dehydration-associated protein-related 0.04 Archaeplastida
GSVIVT01015304001 No alias Senescence/dehydration-associated protein At4g35985,... 0.03 Archaeplastida
Gb_15332 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_39730 No alias Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
MA_124888g0010 No alias Senescence/dehydration-associated protein At4g35985,... 0.02 Archaeplastida
MA_186639g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_202072g0010 No alias Senescence/dehydration-associated protein At4g35985,... 0.02 Archaeplastida
MA_4456863g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_460372g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8979358g0010 No alias Senescence/dehydration-associated protein At4g35985,... 0.03 Archaeplastida
Pp3c22_6990V3.1 No alias Senescence/dehydration-associated protein-related 0.03 Archaeplastida
Pp3c2_37270V3.1 No alias Senescence/dehydration-associated protein-related 0.03 Archaeplastida
Smo111719 No alias Senescence/dehydration-associated protein At4g35985,... 0.03 Archaeplastida
Smo77517 No alias Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
Solyc02g062050.3.1 No alias Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
Solyc12g008460.2.1 No alias Senescence/dehydration-associated protein At4g35985,... 0.03 Archaeplastida
Zm00001e028202_P001 No alias Senescence/dehydration-associated protein At4g35985,... 0.06 Archaeplastida
Zm00001e038603_P001 No alias Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009686 Senescence/spartin 184 369
No external refs found!