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  5. LOC_Os01g52560.1

LOC_Os01g52560.1


Description : subfamily ABCG transporter


Gene families : OG0000050 (Archaeplastida) Phylogenetic Tree(s): OG0000050_tree ,
OG_05_0000049 (LandPlants) Phylogenetic Tree(s): OG_05_0000049_tree ,
OG_06_0000052 (SeedPlants) Phylogenetic Tree(s): OG_06_0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52560.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00242220 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 Archaeplastida
AMTR_s00122p00119310 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AT2G26910 PDR4, ATPDR4 pleiotropic drug resistance 4 0.02 Archaeplastida
AT2G36380 PDR6, ATPDR6 pleiotropic drug resistance 6 0.1 Archaeplastida
GSVIVT01016999001 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
GSVIVT01017198001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01017204001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01024743001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01034746001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Gb_34309 No alias subfamily ABCG transporter 0.02 Archaeplastida
Gb_34310 No alias ABC transporter G family member 31 OS=Arabidopsis... 0.03 Archaeplastida
Gb_37006 No alias subfamily ABCG transporter 0.02 Archaeplastida
MA_10427561g0020 No alias ABC transporter G family member 31 OS=Oryza sativa... 0.02 Archaeplastida
MA_10433422g0010 No alias subfamily ABCG transporter 0.03 Archaeplastida
MA_10435419g0010 No alias ABC transporter G family member 35 OS=Oryza sativa... 0.04 Archaeplastida
MA_18770g0010 No alias subfamily ABCG transporter 0.04 Archaeplastida
MA_249533g0010 No alias ABC transporter G family member 31 OS=Arabidopsis... 0.03 Archaeplastida
MA_525120g0010 No alias ABC transporter G family member 51 OS=Oryza sativa... 0.04 Archaeplastida
Mp1g25350.1 No alias subfamily ABCG transporter 0.03 Archaeplastida
Mp2g07030.1 No alias subfamily ABCG transporter 0.01 Archaeplastida
Mp2g21800.1 No alias subfamily ABCG transporter 0.01 Archaeplastida
Pp3c16_13830V3.1 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.02 Archaeplastida
Pp3c18_21520V3.1 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.01 Archaeplastida
Pp3c4_2380V3.1 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.01 Archaeplastida
Smo115821 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Smo118688 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo412699 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo412710 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
Smo417263 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
Smo417266 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Smo424638 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Smo441717 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo441722 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo96758 No alias Solute transport.primary active transport.ABC... 0.04 Archaeplastida
Solyc12g019620.2.1 No alias subfamily ABCG transporter 0.02 Archaeplastida
Solyc12g098210.3.1 No alias subfamily ABCG transporter 0.06 Archaeplastida
Solyc12g100190.2.1 No alias subfamily ABCG transporter 0.03 Archaeplastida
Zm00001e003743_P001 No alias subfamily ABCG transporter 0.03 Archaeplastida
Zm00001e006460_P001 No alias subfamily ABCG transporter 0.05 Archaeplastida
Zm00001e030669_P001 No alias subfamily ABCG transporter 0.02 Archaeplastida
Zm00001e033859_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e037233_P001 No alias subfamily ABCG transporter 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013581 PDR_assoc 412 474
IPR003439 ABC_transporter-like 586 737
IPR013525 ABC_2_trans 883 1096
IPR013525 ABC_2_trans 196 406
No external refs found!