LOC_Os01g54870.1

Description : component RPL18a of LSU proteome component

Gene families : OG0001762 (Archaeplastida) Phylogenetic Tree(s): OG0001762_tree ,
OG_05_0001750 (LandPlants) Phylogenetic Tree(s): OG_05_0001750_tree ,
OG_06_0001973 (SeedPlants) Phylogenetic Tree(s): OG_06_0001973_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g54870.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00102800	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
AMTR_s00003p00234980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
AT1G29965	No alias	Ribosomal protein L18ae/LX family protein	0.08	Archaeplastida
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.32	Archaeplastida
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.22	Archaeplastida
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	Archaeplastida
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	Archaeplastida
GSVIVT01000485001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	Archaeplastida
GSVIVT01021430001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
GSVIVT01021433001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
Gb_05341	No alias	component RPL18a of LSU proteome component	0.04	Archaeplastida
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.15	Archaeplastida
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.32	Archaeplastida
Pp3c12_7770V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.22	Archaeplastida
Pp3c13_12320V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.04	Archaeplastida
Pp3c20_15150V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.16	Archaeplastida
Pp3c24_18790V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.02	Archaeplastida
Pp3c3_11250V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.22	Archaeplastida
Pp3c8_13880V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.1	Archaeplastida
Smo227198	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
Solyc02g070640.3.1	No alias	component RPL18a of LSU proteome component	0.1	Archaeplastida
Solyc02g070650.2.1	No alias	component RPL18a of LSU proteome component	0.06	Archaeplastida
Solyc06g065590.4.1	No alias	component RPL18a of LSU proteome component	0.1	Archaeplastida
Solyc08g016180.3.1	No alias	component RPL18a of LSU proteome component	0.19	Archaeplastida
Zm00001e020218_P001	No alias	component RPL18a of LSU proteome component	0.14	Archaeplastida
Zm00001e026540_P001	No alias	component RPL18a of LSU proteome component	0.26	Archaeplastida
Zm00001e028015_P002	No alias	component RPL18a of LSU proteome component	0.17	Archaeplastida
Zm00001e032436_P001	No alias	component RPL18a of LSU proteome component	0.27	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006448	regulation of translational elongation	IEP	Neighborhood
BP	GO:0006449	regulation of translational termination	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0007021	tubulin complex assembly	IEP	Neighborhood
BP	GO:0007023	post-chaperonin tubulin folding pathway	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Neighborhood
MF	GO:0043022	ribosome binding	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0045727	positive regulation of translation	IEP	Neighborhood
BP	GO:0045901	positive regulation of translational elongation	IEP	Neighborhood
BP	GO:0045905	positive regulation of translational termination	IEP	Neighborhood
MF	GO:0048487	beta-tubulin binding	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	128

External Links

No external refs found!

LOC_Os01g54870.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation