AMTR_s00002p00225030 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.247

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica

Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003742 (LandPlants) Phylogenetic Tree(s): OG_05_0003742_tree ,
OG_06_0004412 (SeedPlants) Phylogenetic Tree(s): OG_06_0004412_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00225030
Cluster	HCCA: Cluster_194

Target	Alias	Description	ECC score	Gene Family Method
AT2G40700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
AT3G18600	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.07	Archaeplastida
AT5G05450	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
Cpa\|evm.model.tig00020684.38	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.02	Archaeplastida
Cre03.g156150	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.09	Archaeplastida
Cre03.g188550	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.05	Archaeplastida
Cre06.g282600	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cre07.g314900	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.06	Archaeplastida
GSVIVT01008218001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.07	Archaeplastida
GSVIVT01037636001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.07	Archaeplastida
Gb_10018	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.02	Archaeplastida
Gb_12810	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.05	Archaeplastida
Gb_16157	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os01g07080.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.05	Archaeplastida
LOC_Os03g58810.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.08	Archaeplastida
LOC_Os05g01990.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.02	Archaeplastida
LOC_Os07g33340.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.03	Archaeplastida
MA_10334041g0020	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.05	Archaeplastida
MA_10428589g0010	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis...	0.02	Archaeplastida
MA_109969g0010	No alias	DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis...	0.07	Archaeplastida
MA_146094g0010	No alias	no hits & (original description: none)	0.01	Archaeplastida
MA_7914832g0010	No alias	No annotation	0.01	Archaeplastida
Mp6g05260.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.05	Archaeplastida
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.07	Archaeplastida
Mp8g10290.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c11_510V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Archaeplastida
Pp3c17_13450V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
Pp3c1_22540V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.09	Archaeplastida
Pp3c4_14810V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.06	Archaeplastida
Solyc03g114370.4.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
Solyc07g064520.3.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e010480_P001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.04	Archaeplastida
Zm00001e011842_P001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	Archaeplastida
Zm00001e016823_P002	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.02	Archaeplastida
Zm00001e027024_P001	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008026	ATP-dependent helicase activity	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0007049	cell cycle	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0008156	negative regulation of DNA replication	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015093	ferrous iron transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015684	ferrous iron transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045005	DNA-dependent DNA replication maintenance of fidelity	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0048478	replication fork protection	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	287	362
IPR025313	DUF4217	403	465
IPR011545	DEAD/DEAH_box_helicase_dom	46	217

External Links

No external refs found!

AMTR_s00002p00225030 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation