1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g55750.1

LOC_Os01g55750.1


Description : transcription factor (TCP)


Gene families : OG0000332 (Archaeplastida) Phylogenetic Tree(s): OG0000332_tree ,
OG_05_0000167 (LandPlants) Phylogenetic Tree(s): OG_05_0000167_tree ,
OG_06_0000105 (SeedPlants) Phylogenetic Tree(s): OG_06_0000105_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g55750.1
Cluster HCCA: Cluster_291

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TCP... 0.09 Archaeplastida
AT3G02150 TCP13, TFPD, PTF1 plastid transcription factor 1 0.03 Archaeplastida
GSVIVT01008109001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 Archaeplastida
GSVIVT01014236001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.05 Archaeplastida
Gb_17863 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os01g11550.1 No alias transcription factor (TCP) 0.03 Archaeplastida
LOC_Os03g49880.1 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_101752g0020 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_35349g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_37369g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_4774g0010 No alias transcription factor (TCP) 0.04 Archaeplastida
MA_52440g0010 No alias transcription factor (TCP) 0.04 Archaeplastida
MA_547683g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
MA_75780g0010 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc02g065800.3.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Solyc02g077250.2.1 No alias transcription factor (TCP) 0.04 Archaeplastida
Solyc04g006980.1.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc05g009900.3.1 No alias transcription factor (TCP) 0.02 Archaeplastida
Solyc06g069240.2.1 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e004148_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e005407_P001 No alias transcription factor (TCP) 0.05 Archaeplastida
Zm00001e005909_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e009811_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e011516_P001 No alias transcription factor (TCP) 0.04 Archaeplastida
Zm00001e011911_P001 No alias transcription factor (TCP) 0.03 Archaeplastida
Zm00001e012216_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032122_P001 No alias transcription factor (TCP) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 56 117
No external refs found!