LOC_Os01g56190.1

Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana (sp|f4iny4|hvt1_arath : 1244.0)

Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0007605 (LandPlants) Phylogenetic Tree(s): OG_05_0007605_tree ,
OG_06_0008692 (SeedPlants) Phylogenetic Tree(s): OG_06_0008692_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g56190.1
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00025p00230510	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	Archaeplastida
AMTR_s00028p00237040	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00032p00104970	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.03	Archaeplastida
AT1G58060	No alias	RNA helicase family protein	0.03	Archaeplastida
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.04	Archaeplastida
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Archaeplastida
GSVIVT01011809001	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.04	Archaeplastida
GSVIVT01034780001	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_05411	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.06	Archaeplastida
Gb_33245	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
Gb_40990	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432575g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.04	Archaeplastida
MA_22839g0010	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.03	Archaeplastida
MA_291146g0010	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	Archaeplastida
Mp5g09990.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
Pp3c11_11510V3.1	No alias	helicase in vascular tissue and tapetum	0.06	Archaeplastida
Pp3c11_11920V3.1	No alias	RNA helicase family protein	0.03	Archaeplastida
Pp3c14_12310V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c26_14400V3.1	No alias	RNA helicase family protein	0.04	Archaeplastida
Pp3c2_32730V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Archaeplastida
Smo177444	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
Solyc01g006970.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g103690.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	Archaeplastida
Solyc04g007510.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.03	Archaeplastida
Solyc07g044930.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e004608_P001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004525	ribonuclease III activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005956	protein kinase CK2 complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001374	R3H_dom	47	106
IPR007502	Helicase-assoc_dom	764	886
IPR011709	DUF1605	924	1011
IPR011545	DEAD/DEAH_box_helicase_dom	214	379
IPR001650	Helicase_C	570	699

External Links

No external refs found!

LOC_Os01g56190.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation