LOC_Os01g56800.1


Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein


Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0021315 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020568 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g56800.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT5G43560 No alias TRAF-like superfamily protein 0.06 Archaeplastida
Pp3c12_900V3.1 No alias TRAF-like superfamily protein 0.03 Archaeplastida
Zm00001e003140_P001 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 Archaeplastida
Zm00001e018034_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.05 Archaeplastida
Zm00001e019653_P002 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 Archaeplastida
Zm00001e027387_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 Archaeplastida
Zm00001e032087_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 107 224
No external refs found!