LOC_Os01g57110.1

Description : chromatin remodeling factor (Ris1)

Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0002524 (LandPlants) Phylogenetic Tree(s): OG_05_0002524_tree ,
OG_06_0002344 (SeedPlants) Phylogenetic Tree(s): OG_06_0002344_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g57110.1
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AT1G50410	No alias	SNF2 domain-containing protein / helicase...	0.04	Archaeplastida
AT1G61140	EDA16	SNF2 domain-containing protein / helicase...	0.03	Archaeplastida
AT5G05130	No alias	DNA/RNA helicase protein	0.02	Archaeplastida
Cpa\|evm.model.tig00021014.10	No alias	DNA repair protein RAD5A OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01006339001	No alias	Chromatin organisation.chromatin remodeling...	0.06	Archaeplastida
GSVIVT01034370001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Gb_33076	No alias	chromatin remodeling factor (Ris1)	0.05	Archaeplastida
MA_4534g0010	No alias	Helicase-like transcription factor CHR28 OS=Arabidopsis...	0.03	Archaeplastida
Mp8g05230.1	No alias	chromatin remodeling factor (Ris1)	0.03	Archaeplastida
Pp3c21_12900V3.1	No alias	SNF2 domain-containing protein / helicase...	0.03	Archaeplastida
Smo110695	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
Smo414152	No alias	DNA repair protein RAD5A OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc12g020110.2.1	No alias	chromatin remodeling factor (Rad5)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	509	897
IPR001650	Helicase_C	1071	1170

External Links

No external refs found!

LOC_Os01g57110.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation