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  5. AMTR_s00002p00232980

AMTR_s00002p00232980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.268

Description : Vesicle trafficking.endomembrane trafficking.PI3-kinase vesicle nucleation complex I/II.TRAF1 ATG6-stability regulator protein


Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0002285 (LandPlants) Phylogenetic Tree(s): OG_05_0002285_tree ,
OG_06_0002760 (SeedPlants) Phylogenetic Tree(s): OG_06_0002760_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00232980
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018133001 No alias Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.04 Archaeplastida
Pp3c12_900V3.1 No alias TRAF-like superfamily protein 0.02 Archaeplastida
Solyc09g089560.4.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Zm00001e003140_P001 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Zm00001e027387_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Zm00001e032087_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 66 182
No external refs found!