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  5. LOC_Os01g58400.1

LOC_Os01g58400.1


Description : modification writer component RING1 of modification writer protein components


Gene families : OG0002319 (Archaeplastida) Phylogenetic Tree(s): OG0002319_tree ,
OG_05_0003086 (LandPlants) Phylogenetic Tree(s): OG_05_0003086_tree ,
OG_06_0002940 (SeedPlants) Phylogenetic Tree(s): OG_06_0002940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g58400.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT5G44280 ATRING1A, RING1A RING 1A 0.04 Archaeplastida
Cpa|evm.model.tig00020572.45 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Pp3c25_5150V3.1 No alias RING 1A 0.03 Archaeplastida
Zm00001e027353_P002 No alias modification writer component RING1 of modification... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!