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  5. AMTR_s00002p00240480

AMTR_s00002p00240480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.299

Description : Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.arabinogalactan proteins (AGPs).glycoproteins.xylogen-type arabinogalactan protein


Gene families : OG0000162 (Archaeplastida) Phylogenetic Tree(s): OG0000162_tree ,
OG_05_0000065 (LandPlants) Phylogenetic Tree(s): OG_05_0000065_tree ,
OG_06_0000848 (SeedPlants) Phylogenetic Tree(s): OG_06_0000848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00240480
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00104040 evm_27.TU.AmTr_v1... Protein YLS3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G13820 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
AT3G43720 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.05 Archaeplastida
AT3G58550 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Archaeplastida
AT4G14815 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Archaeplastida
GSVIVT01001178001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 Archaeplastida
GSVIVT01001181001 No alias No description available 0.04 Archaeplastida
GSVIVT01018008001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 Archaeplastida
GSVIVT01018010001 No alias No description available 0.03 Archaeplastida
GSVIVT01029796001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
Gb_02445 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Gb_02446 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Gb_02458 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
Gb_11754 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
LOC_Os01g59870.1 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
LOC_Os03g09230.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
LOC_Os03g57970.2 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
LOC_Os03g58940.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
LOC_Os07g07930.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
LOC_Os07g30590.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10069449g0010 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
MA_10434155g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_113140g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_133359g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_5581g0010 No alias xylogen-type arabinogalactan protein 0.05 Archaeplastida
MA_64802g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g21600.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp8g18180.1 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Pp3c11_11470V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.02 Archaeplastida
Pp3c1_31020V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
Pp3c2_6280V3.1 No alias glycosylphosphatidylinositol-anchored lipid protein transfer 1 0.03 Archaeplastida
Pp3c6_760V3.1 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.04 Archaeplastida
Solyc01g005985.1.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Solyc01g105010.3.1 No alias xylogen-type arabinogalactan protein 0.09 Archaeplastida
Solyc06g054060.1.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Solyc06g073660.3.1 No alias xylogen-type arabinogalactan protein 0.07 Archaeplastida
Solyc09g065410.4.1 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Solyc09g065430.4.1 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
Solyc09g082280.3.1 No alias xylogen-type arabinogalactan protein 0.04 Archaeplastida
Solyc09g082290.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g072030.3.1 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
Zm00001e005959_P003 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Zm00001e005960_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e005961_P001 No alias xylogen-type arabinogalactan protein 0.03 Archaeplastida
Zm00001e011883_P002 No alias xylogen-type arabinogalactan protein 0.02 Archaeplastida
Zm00001e028880_P001 No alias xylogen-type arabinogalactan protein 0.05 Archaeplastida
Zm00001e032912_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 13 111
No external refs found!