LOC_Os01g61814.1

Description : component RPS23 of SSU proteome

Gene families : OG0001653 (Archaeplastida) Phylogenetic Tree(s): OG0001653_tree ,
OG_05_0078949 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0067749 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g61814.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00204160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	Archaeplastida
AT3G09680	No alias	Ribosomal protein S12/S23 family protein	0.05	Archaeplastida
AT5G02960	No alias	Ribosomal protein S12/S23 family protein	0.42	Archaeplastida
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.34	Archaeplastida
GSVIVT01016341001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
GSVIVT01025120001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	Archaeplastida
GSVIVT01025626001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	Archaeplastida
Gb_02361	No alias	component RPS23 of SSU proteome	0.17	Archaeplastida
Gb_36570	No alias	component RPS23 of SSU proteome	0.16	Archaeplastida
MA_10436470g0020	No alias	component RPS23 of SSU proteome	0.28	Archaeplastida
MA_19871g0020	No alias	component RPS23 of SSU proteome	0.14	Archaeplastida
MA_9043057g0010	No alias	component RPS23 of SSU proteome	0.14	Archaeplastida
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.4	Archaeplastida
Pp3c11_11070V3.1	No alias	Ribosomal protein S12/S23 family protein	0.24	Archaeplastida
Pp3c12_25120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.17	Archaeplastida
Pp3c2_24130V3.1	No alias	Ribosomal protein S12/S23 family protein	0.33	Archaeplastida
Pp3c4_3120V3.1	No alias	Ribosomal protein S12/S23 family protein	0.22	Archaeplastida
Pp3c7_14200V3.1	No alias	Ribosomal protein S12/S23 family protein	0.26	Archaeplastida
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
Solyc09g007350.3.1	No alias	component RPS23 of SSU proteome	0.26	Archaeplastida
Solyc10g084310.2.1	No alias	component RPS23 of SSU proteome	0.24	Archaeplastida
Solyc10g086020.3.1	No alias	component RPS23 of SSU proteome	0.35	Archaeplastida
Zm00001e006170_P001	No alias	component RPS23 of SSU proteome	0.4	Archaeplastida
Zm00001e011770_P001	No alias	component RPS23 of SSU proteome	0.25	Archaeplastida
Zm00001e019377_P001	No alias	component RPS23 of SSU proteome	0.42	Archaeplastida
Zm00001e027265_P001	No alias	component RPS23 of SSU proteome	0.37	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	140
IPR006032	Ribosomal_S12/S23	201	311

External Links

No external refs found!

LOC_Os01g61814.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation