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  5. LOC_Os01g62220.1

LOC_Os01g62220.1


Description : Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana (sp|q9fih2|pp414_arath : 519.0)


Gene families : OG0012932 (Archaeplastida) Phylogenetic Tree(s): OG0012932_tree ,
OG_05_0012884 (LandPlants) Phylogenetic Tree(s): OG_05_0012884_tree ,
OG_06_0012910 (SeedPlants) Phylogenetic Tree(s): OG_06_0012910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g62220.1
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
AT5G42450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Solyc09g005710.3.1 No alias Pentatricopeptide repeat-containing protein At5g42450,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 8 37
IPR002885 Pentatricopeptide_repeat 237 284
IPR002885 Pentatricopeptide_repeat 137 184
IPR002885 Pentatricopeptide_repeat 104 133
No external refs found!