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  5. LOC_Os01g64770.1

LOC_Os01g64770.1


Description : Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana (sp|q6icx4|ptbp3_arath : 598.0)


Gene families : OG0003139 (Archaeplastida) Phylogenetic Tree(s): OG0003139_tree ,
OG_05_0003616 (LandPlants) Phylogenetic Tree(s): OG_05_0003616_tree ,
OG_06_0003439 (SeedPlants) Phylogenetic Tree(s): OG_06_0003439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g64770.1
Cluster HCCA: Cluster_360

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.21 No alias Polypyrimidine tract-binding protein homolog 3... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004814 arginine-tRNA ligase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006420 arginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008418 protein-N-terminal asparagine amidohydrolase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 370 434
IPR000504 RRM_dom 9 64
IPR021790 DUF3355 100 177
No external refs found!