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  5. AMTR_s00002p00246870

AMTR_s00002p00246870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.334

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001808 (SeedPlants) Phylogenetic Tree(s): OG_06_0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00246870
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00149030 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
AMTR_s00138p00054750 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
AT1G31740 BGAL15 beta-galactosidase 15 0.02 Archaeplastida
AT2G04060 No alias glycosyl hydrolase family 35 protein 0.02 Archaeplastida
AT3G53050 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.04 Archaeplastida
AT4G26140 BGAL12 beta-galactosidase 12 0.02 Archaeplastida
AT4G35010 BGAL11 beta-galactosidase 11 0.02 Archaeplastida
AT4G38590 BGAL14 beta-galactosidase 14 0.04 Archaeplastida
GSVIVT01008835001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01009791001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01015038001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
GSVIVT01018853001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
GSVIVT01024031001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Gb_35384 No alias Beta-galactosidase 9 OS=Arabidopsis thaliana... 0.1 Archaeplastida
LOC_Os01g39830.1 No alias beta-galactosidase (BGAL) 0.12 Archaeplastida
LOC_Os01g65460.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.04 Archaeplastida
LOC_Os06g37560.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
LOC_Os06g42310.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
LOC_Os09g36810.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Smo269483 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
Solyc07g038110.3.1 No alias No annotation 0.04 Archaeplastida
Solyc07g038120.1.1 No alias Beta-galactosidase OS=Malus domestica... 0.03 Archaeplastida
Solyc10g055470.2.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc11g018490.3.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc11g018500.3.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.01 Archaeplastida
Zm00001e010258_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e024694_P002 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e024944_P002 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e035986_P002 No alias beta-galactosidase (BGAL) 0.01 Archaeplastida
Zm00001e037281_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 760 836
IPR001944 Glycoside_Hdrlase_35 30 335
No external refs found!