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  5. LOC_Os01g66160.1

LOC_Os01g66160.1


Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana (sp|q9si53|pp147_arath : 416.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g66160.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00156450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
AMTR_s00071p00124250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
Pp3c11_7720V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo173093 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
Solyc03g114010.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.08 Archaeplastida
Solyc10g005090.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0032958 inositol phosphate biosynthetic process IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 383 507
IPR002885 Pentatricopeptide_repeat 183 208
IPR002885 Pentatricopeptide_repeat 284 306
IPR002885 Pentatricopeptide_repeat 82 108
IPR002885 Pentatricopeptide_repeat 10 40
IPR002885 Pentatricopeptide_repeat 110 140
IPR002885 Pentatricopeptide_repeat 210 255
No external refs found!