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  5. LOC_Os01g66970.1

LOC_Os01g66970.1


Description : RING-v-class E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0000506 (LandPlants) Phylogenetic Tree(s): OG_05_0000506_tree ,
OG_06_0001067 (SeedPlants) Phylogenetic Tree(s): OG_06_0001067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g66970.1
Cluster HCCA: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc02g091230.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e009834_P004 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031477_P002 No alias RING-v-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 93 208
IPR011016 Znf_RING-CH 42 87
No external refs found!