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  5. AMTR_s00002p00249620

AMTR_s00002p00249620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.348

Description : Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica


Gene families : OG0007743 (Archaeplastida) Phylogenetic Tree(s): OG0007743_tree ,
OG_05_0008509 (LandPlants) Phylogenetic Tree(s): OG_05_0008509_tree ,
OG_06_0008387 (SeedPlants) Phylogenetic Tree(s): OG_06_0008387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00249620
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_21962 No alias Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.09 Archaeplastida
LOC_Os03g58540.1 No alias Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.07 Archaeplastida
Mp7g15120.1 No alias Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.03 Archaeplastida
Solyc04g080900.3.1 No alias Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.05 Archaeplastida
Zm00001e006024_P001 No alias Probable GTP-binding protein OBGC2 OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006169 GTP1_OBG_dom 141 238
IPR006073 GTP_binding_domain 282 409
No external refs found!