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  5. LOC_Os01g67740.1

LOC_Os01g67740.1


Description : component CAP-E2/SMC2 of condensin I/II complex


Gene families : OG0004321 (Archaeplastida) Phylogenetic Tree(s): OG0004321_tree ,
OG_05_0004824 (LandPlants) Phylogenetic Tree(s): OG_05_0004824_tree ,
OG_06_0005570 (SeedPlants) Phylogenetic Tree(s): OG_06_0005570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g67740.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.07 Archaeplastida
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.07 Archaeplastida
Cpa|evm.model.tig00000615.55 No alias Cell cycle.mitosis and meiosis.chromatin... 0.03 Archaeplastida
Cre02.g086650 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 Archaeplastida
GSVIVT01018715001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
Gb_17843 No alias component CAP-E2/SMC2 of condensin I/II complex 0.06 Archaeplastida
MA_15346g0010 No alias component CAP-E2/SMC2 of condensin I/II complex 0.03 Archaeplastida
Mp1g04330.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.05 Archaeplastida
Pp3c13_8840V3.1 No alias structural maintenance of chromosomes 2 0.05 Archaeplastida
Smo137981 No alias Cell cycle.mitosis and meiosis.chromatin... 0.03 Archaeplastida
Solyc03g093250.2.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.08 Archaeplastida
Solyc03g093260.3.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.08 Archaeplastida
Zm00001e018930_P001 No alias component CAP-E2/SMC2 of condensin I/II complex 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 638
IPR003395 RecF/RecN/SMC_N 2 517
IPR003395 RecF/RecN/SMC_N 851 1161
No external refs found!