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  5. AMTR_s00002p00251130

AMTR_s00002p00251130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.356

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.KTF1/SPT5L auxilary silencing factor


Gene families : OG0001535 (Archaeplastida) Phylogenetic Tree(s): OG0001535_tree ,
OG_05_0009772 (LandPlants) Phylogenetic Tree(s): OG_05_0009772_tree ,
OG_06_0007846 (SeedPlants) Phylogenetic Tree(s): OG_06_0007846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00251130
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 Archaeplastida
LOC_Os06g10620.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.05 Archaeplastida
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.04 Archaeplastida
Zm00001e032078_P001 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 Archaeplastida
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005100 NGN-domain 158 241
No external refs found!