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  5. LOC_Os01g68320.2

LOC_Os01g68320.2


Description : pre-mRNA splicing regulator (DDX5)


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0003605 (LandPlants) Phylogenetic Tree(s): OG_05_0003605_tree ,
OG_06_0003577 (SeedPlants) Phylogenetic Tree(s): OG_06_0003577_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g68320.2
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT3G06480 No alias DEAD box RNA helicase family protein 0.04 Archaeplastida
Gb_31459 No alias pre-mRNA splicing regulator (DDX5) 0.04 Archaeplastida
MA_5118g0010 No alias ATP-dependent RNA helicase-like protein DB10... 0.03 Archaeplastida
MA_881548g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 Archaeplastida
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Smo98552 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Solyc12g044860.3.1 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e011376_P001 No alias ATP-dependent RNA helicase-like protein DB10... 0.03 Archaeplastida
Zm00001e020727_P006 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 482 591
IPR011545 DEAD/DEAH_box_helicase_dom 275 445
No external refs found!