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  5. LOC_Os01g72490.1

LOC_Os01g72490.1


Description : transcription factor (SRS)


Gene families : OG0001199 (Archaeplastida) Phylogenetic Tree(s): OG0001199_tree ,
OG_05_0000755 (LandPlants) Phylogenetic Tree(s): OG_05_0000755_tree ,
OG_06_0000578 (SeedPlants) Phylogenetic Tree(s): OG_06_0000578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g72490.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00223800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SRS... 0.06 Archaeplastida
AMTR_s00063p00161200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SRS... 0.04 Archaeplastida
AT1G19790 SRS7 SHI-related sequence 7 0.04 Archaeplastida
AT1G75520 SRS5 SHI-related sequence 5 0.09 Archaeplastida
AT2G18120 SRS4 SHI-related sequence 4 0.06 Archaeplastida
AT2G21400 SRS3 SHI-related sequence3 0.05 Archaeplastida
AT3G51060 SRS1, STY1 Lateral root primordium (LRP) protein-related 0.07 Archaeplastida
AT4G36260 SRS2, STY2 Lateral root primordium (LRP) protein-related 0.04 Archaeplastida
AT5G12330 LRP1 Lateral root primordium (LRP) protein-related 0.05 Archaeplastida
AT5G66350 SHI Lateral root primordium (LRP) protein-related 0.05 Archaeplastida
GSVIVT01009812001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.04 Archaeplastida
GSVIVT01024206001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.06 Archaeplastida
LOC_Os05g32070.1 No alias transcription factor (SRS) 0.05 Archaeplastida
LOC_Os06g49830.1 No alias transcription factor (SRS) 0.06 Archaeplastida
LOC_Os09g36160.1 No alias transcription factor (SRS) 0.06 Archaeplastida
MA_2299g0010 No alias transcription factor (SRS) 0.03 Archaeplastida
MA_53545g0010 No alias transcription factor (SRS) 0.02 Archaeplastida
Solyc02g062400.3.1 No alias transcription factor (SRS) 0.02 Archaeplastida
Solyc10g054070.1.1 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e004006_P001 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e010227_P001 No alias transcription factor (SRS) 0.05 Archaeplastida
Zm00001e013256_P002 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e024681_P001 No alias transcription factor (SRS) 0.06 Archaeplastida
Zm00001e026854_P001 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e028304_P001 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e030189_P001 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e031567_P001 No alias transcription factor (SRS) 0.06 Archaeplastida
Zm00001e034798_P001 No alias transcription factor (SRS) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!