Description : subunit 1 of Pol V RNA polymerase

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0004225 (LandPlants) Phylogenetic Tree(s): OG_05_0004225_tree ,
OG_06_0004863 (SeedPlants) Phylogenetic Tree(s): OG_06_0004863_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: LOC_Os01g73430.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT1G63020 NRPD1A, POL IVA,... nuclear RNA polymerase D1A 0.04 Archaeplastida
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.03 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.02 Archaeplastida
Gb_06029 No alias subunit 1 of Pol II RNA polymerase 0.03 Archaeplastida
Mp3g15530.1 No alias subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.02 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 325 485
IPR007080 RNA_pol_Rpb1_1 19 291
No external refs found!