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  5. LOC_Os01g74030.1

LOC_Os01g74030.1


Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 664.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g74030.1
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001065.14 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00001065.15 No alias No description available 0.02 Archaeplastida
GSVIVT01024918001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_12280g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_23070g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027653_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e029661_P001 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 233 391
IPR012940 NABP 348 558
IPR001313 Pumilio_RNA-bd_rpt 705 737
IPR001313 Pumilio_RNA-bd_rpt 632 662
IPR001313 Pumilio_RNA-bd_rpt 776 805
IPR001313 Pumilio_RNA-bd_rpt 676 700
IPR001313 Pumilio_RNA-bd_rpt 820 852
IPR001313 Pumilio_RNA-bd_rpt 598 627
IPR001313 Pumilio_RNA-bd_rpt 741 771
IPR001313 Pumilio_RNA-bd_rpt 560 593
No external refs found!