LOC_Os02g01820.1

Description : subfamily ABCA transporter

Gene families : OG0000865 (Archaeplastida) Phylogenetic Tree(s): OG0000865_tree ,
OG_05_0013932 (LandPlants) Phylogenetic Tree(s): OG_05_0013932_tree ,
OG_06_0016834 (SeedPlants) Phylogenetic Tree(s): OG_06_0016834_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g01820.1
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AT3G47740	ATATH2, ATH2, ABCA3	ABC2 homolog 2	0.03	Archaeplastida
AT3G47760	ATATH4, ABCA5, ATH4	ABC2 homolog 4	0.03	Archaeplastida
AT3G47770	ATH5, ATATH5, ABCA6	ABC2 homolog 5	0.03	Archaeplastida
AT3G47790	ATH7, ATATH7	ABC2 homolog 7	0.02	Archaeplastida
LOC_Os08g30770.1	No alias	subfamily ABCA transporter	0.05	Archaeplastida
Smo268954	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	201	260

External Links

No external refs found!