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  5. LOC_Os02g02050.1

LOC_Os02g02050.1


Description : Helicase protein MOM1 OS=Arabidopsis thaliana (sp|q9m658|mom1_arath : 261.0)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0003418 (LandPlants) Phylogenetic Tree(s): OG_05_0003418_tree ,
OG_06_0003791 (SeedPlants) Phylogenetic Tree(s): OG_06_0003791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g02050.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.1 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.08 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.06 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.09 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.06 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.03 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.1 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.09 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017821001 No alias No description available 0.05 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
LOC_Os05g05780.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.03 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436824g0010 No alias No annotation 0.04 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_8000029g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.04 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.04 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.06 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.07 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.06 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.07 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.09 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.06 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 481 666
No external refs found!