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  5. LOC_Os02g02870.1

LOC_Os02g02870.1


Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0001927 (LandPlants) Phylogenetic Tree(s): OG_05_0001927_tree ,
OG_06_0002403 (SeedPlants) Phylogenetic Tree(s): OG_06_0002403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g02870.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Pp3c5_7920V3.1 No alias cold shock domain protein 1 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 160 175
IPR001878 Znf_CCHC 192 206
IPR001878 Znf_CCHC 225 239
IPR001878 Znf_CCHC 125 140
IPR002059 CSP_DNA-bd 8 72
No external refs found!