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  5. LOC_Os02g03930.1

LOC_Os02g03930.1


Description : Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana (sp|q0wpz6|pp158_arath : 720.0)


Gene families : OG0009700 (Archaeplastida) Phylogenetic Tree(s): OG0009700_tree ,
OG_05_0009739 (LandPlants) Phylogenetic Tree(s): OG_05_0009739_tree ,
OG_06_0007391 (SeedPlants) Phylogenetic Tree(s): OG_06_0007391_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g03930.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023885001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.03 Archaeplastida
Solyc02g021020.4.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.04 Archaeplastida
Zm00001e025316_P001 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 313
IPR002885 Pentatricopeptide_repeat 455 487
IPR002885 Pentatricopeptide_repeat 514 545
IPR002885 Pentatricopeptide_repeat 552 599
IPR002885 Pentatricopeptide_repeat 148 193
IPR002885 Pentatricopeptide_repeat 389 436
IPR002885 Pentatricopeptide_repeat 321 368
IPR002885 Pentatricopeptide_repeat 622 671
IPR002885 Pentatricopeptide_repeat 211 259
No external refs found!