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  5. LOC_Os02g04040.1

LOC_Os02g04040.1


Description : component SMC3/TTN7 of cohesin regulator complex


Gene families : OG0005086 (Archaeplastida) Phylogenetic Tree(s): OG0005086_tree ,
OG_05_0006097 (LandPlants) Phylogenetic Tree(s): OG_05_0006097_tree ,
OG_06_0005481 (SeedPlants) Phylogenetic Tree(s): OG_06_0005481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04040.1
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00198810 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000711.46 No alias Structural maintenance of chromosomes protein 3... 0.02 Archaeplastida
Cre10.g445650 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
GSVIVT01033181001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.09 Archaeplastida
MA_10429322g0010 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
Mp5g09700.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.05 Archaeplastida
Pp3c24_13420V3.1 No alias Structural maintenance of chromosomes (SMC) family protein 0.05 Archaeplastida
Solyc06g073780.4.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.09 Archaeplastida
Zm00001e032592_P001 No alias component SMC3/TTN7 of cohesin regulator complex 0.13 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 138 469
No external refs found!